Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs61733126 chr16:71712786 A/G 8.79E-6 175 24.23 31.48 14.5 KM Plot
PCPG rs61733750 chr17:1417231 A/C 1.23E-5 177 25.05 25.87 13.02 KM Plot
PCPG rs61742149 chr2:24290671 G/A 6.56E-5 176 24.62 35.23 21.77 KM Plot
PCPG rs61753396 chr7:1105372 A/G 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs61774839 chr1:56336609 G/A 2.0E-7 174 25.53 25.77 13.27 KM Plot
PCPG rs61779697 chr1:40499879 C/T 3.09E-6 172 24.85 24.88 37.18 KM Plot
PCPG rs61781896 chr1:40518166 G/A 0.000336 175 25 27.27 25.17 KM Plot
PCPG rs61781897 chr1:40518490 C/T 0.000336 174 25.2 27.27 25.17 KM Plot
PCPG rs61781906 chr1:40520607 C/T 6.64E-7 174 25.2 26.92 24.7 KM Plot
PCPG rs61833466 chr1:244153677 C/T 0.000344 171 27.47 22.15 15.8 KM Plot
PCPG rs61833472 chr1:244159220 G/A 0.000285 175 27.47 20.17 15.8 KM Plot
PCPG rs61852569 chr10:90736014 G/A 6.01E-5 171 25.53 24.7 2.93 KM Plot
PCPG rs61874403 chr10:131949879 T/C 0 177 25.47 24.47 3.17 KM Plot
PCPG rs61876573 chr10:131544084 C/T 6.91E-6 175 25.17 28.35 14.25 KM Plot
PCPG rs61876575 chr10:131548027 A/C 6.75E-6 176 25.08 28.35 14.25 KM Plot